MicroscopyGPT¶

Microscopy Suite with 3 tabs: (1) STEM Analyzer — proxy to MicroscopyGPT service (port 7000) for atom column detection and classification, (2) STEM Generator — simulate STEM images from crystal structures, (3) STM Image generator.

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Overview¶

Microscopy Suite with 3 tabs: (1) STEM Analyzer — proxy to MicroscopyGPT service (port 7000) for atom column detection and classification, (2) STEM Generator — simulate STEM images from crystal structures, (3) STM Image generator.

Data Source

MicroscopyGPT model + jarvis.io.stm

Endpoints¶

GET /microscopy
GET /microscopy/health
POST /microscopy/predict
POST /microscopy/segment
POST /microscopy/stem_generate
POST /microscopy/stm_image

Request Models: —

Authentication

All POST endpoints require Authorization: Bearer YOUR_TOKEN.

API Example¶

import requests

response = requests.post(
    "https://atomgpt.org/microscopy/predict",
    headers={
        "Authorization": "Bearer sk-XYZ",
        "accept": "application/json",
        "Content-Type": "application/json",
    },
    json={"jid": "JVASP-1002"},
)
data = response.json()
print(data)

AGAPI Agent¶

from agapi.agents import AGAPIAgent
import os

agent = AGAPIAgent(api_key=os.environ.get("AGAPI_KEY"))
response = agent.query_sync("Show microscopygpt for Silicon")
print(response)

Reference¶

J. Chem. Inf. Model 63, 1708 (2023); J. Phys. Chem. Lett. 16, 7028 (2025)