PDB Explorer¶

Search 200K+ protein structures from RCSB PDB. 3D Mol* viewer (RCSB embed iframe), sequence display with position markers, unit cell and crystallographic data, polymer entities. Uses RCSB REST API (no key needed).

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Overview¶

Search 200K+ protein structures from RCSB PDB. 3D Mol* viewer (RCSB embed iframe), sequence display with position markers, unit cell and crystallographic data, polymer entities. Uses RCSB REST API (no key needed).

Data Source

RCSB PDB REST API

Endpoints¶

GET /pdb_explorer
POST /pdb_explorer/search
GET /pdb_explorer/entry/{pdb_id}

Request Models: PDBSearchRequest

Authentication

All POST endpoints require Authorization: Bearer YOUR_TOKEN.

API Example¶

import requests

response = requests.post(
    "https://atomgpt.org/pdb_explorer/search",
    headers={
        "Authorization": "Bearer sk-XYZ",
        "accept": "application/json",
        "Content-Type": "application/json",
    },
    json={"jid": "JVASP-1002"},
)
data = response.json()
print(data)

AGAPI Agent¶

from agapi.agents import AGAPIAgent
import os

agent = AGAPIAgent(api_key=os.environ.get("AGAPI_KEY"))
response = agent.query_sync("Show pdb explorer for Silicon")
print(response)

Reference¶

Nucleic Acids Res. 28, 235 (2000)