Protein Fold

Protein structure prediction using ESMFold/OpenFold. Paste amino acid sequence, get 3D structure with pLDDT confidence. Web endpoint for interactive folding.

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Overview

Protein structure prediction using ESMFold/OpenFold. Paste amino acid sequence, get 3D structure with pLDDT confidence. Web endpoint for interactive folding.

Data Source

ESMFold / OpenFold models

Endpoints

• GET /protein_fold
• GET /protein_fold/query
• POST /protein_fold/query
• POST /protein_fold/predict
• GET /openfold/query

Request Models: ProteinFoldRequest

Authentication

All POST endpoints require Authorization: Bearer YOUR_TOKEN.

API Example

import requests

response = requests.post(
    "https://atomgpt.org/protein_fold/query",
    headers={
        "Authorization": "Bearer sk-XYZ",
        "accept": "application/json",
        "Content-Type": "application/json",
    },
    json={"jid": "JVASP-1002"},
)
data = response.json()
print(data)

AGAPI Agent

from agapi.agents import AGAPIAgent
import os

agent = AGAPIAgent(api_key=os.environ.get("AGAPI_KEY"))
response = agent.query_sync("Show protein fold for Silicon")
print(response)

Reference

• Science (2023)