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OMIM Gene Explorer

Browse the Online Mendelian Inheritance in Man (OMIM) database — 15,000+ genes and 8,000+ phenotypes. Three search modes: Gene Search (by symbol/keyword), Chromosome Browser (by chromosome position), and Clinical Synopsis Search (by phenotype features). Full entry detail with clinical synopsis, allelic variants, and text sections. Uses OMIM REST API.

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Overview

Data Source

OMIM REST API (api.omim.org) — requires API key (configured server-side).

Endpoints

POST /omim/gene_search — Search genes/entries

curl -X POST "https://atomgpt.org/omim/gene_search" \
  -H "Content-Type: application/json" \
  -d '{"search": "BRCA1", "handler": "entry", "limit": 20}'

Also supports preset field: brca_cancer, hemoglobin, collagen, ion_channel, metal_metabolism, kinase, crystallin, mitochondrial.

GET /omim/gene_search — API key auth

curl "https://atomgpt.org/omim/gene_search?search=hemoglobin&APIKEY=sk-XYZ"

POST /omim/entry — Full entry by MIM number

curl -X POST "https://atomgpt.org/omim/entry" \
  -H "Content-Type: application/json" \
  -d '{"mimNumber": 113705}'

POST /omim/genemap — Browse by chromosome

POST /omim/clinical_search — Clinical synopsis search

AGAPI Agent

from agapi.agents import AGAPIAgent
import os
agent = AGAPIAgent(api_key=os.environ.get("AGAPI_KEY"))
response = agent.query_sync("Show omim gene explorer data")
print(response)

References